Sequence analysis tools at Plant Virus Biotechnology lab

Powered by Javier Forment at IBMCP

  1. Search for lab oligonucleotides in a particular sequence: Oligos 1.04
  2. Search sequences in lab 1.04 gBlocks: gBlocks
  3. Search sequences in lab 1.04 plasmids: Plasmids
  4. Find the complementary and reverse complementary oligonucleotides to desing Gibson assemblies: Gibson primers
  5. Reformat long Clustal alignements: Reformat
  6. Look for an existing oligonucleotide at lab 1.04: Existing oligo

Other popular sequence analysis tools in the lab

  1. The Sequence Manipulation Suite (Paul Stothard, UAlberta): SMS
  2. The Sequence Manipulation Suite 2 (Paul Stothard, UAlberta): SMS2
  3. NEBcutter (NEB): NEBcutter
  4. NEBuilder Assembly Tool (NEB): NEBuilder
  5. Clustal Omega (EMBL-EBI): Clustal Omega
  6. CRISPOR (UC Santa Cruz): CRISPOR
  7. Synthego (SYNTHEGO): Synthego
  8. CRISPR MultiTargeter (Sergey Prykhozhij): CRISPR MultiTargeter
  9. Double Digest Calculator (Thermo Fisher Scientific): Double digest
  10. pLannotate (McGuffie & Barrick): pLannotate
  11. ViralZone (Expasy): ViralZone
  12. Description of Plant Viruses (Association of Applied Biologist): DPVweb
  13. CasPEDIA (Innovative Genomics Institute): CasPEDIA
  14. Sol Genomics Network (Fernandez-Pozo et al.): Solgenomics
  15. Cucurbit Genomics (Yu et al. 2023): CuGenDBv2
  16. Fluorescent Protein Database (FPbase): FPbase
  17. Repeats Finder (NovoPro): Repeats Finder